PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0138300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 511aa    MW: 54448.5 Da    PI: 6.7951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0138300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08323370455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Spipo0G0138300 323 SHSLAERVRREKISQRMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 370
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.18E-10317374No hitNo description
SuperFamilySSF474591.31E-16317388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.256319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16319387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5323370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-9325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MEEKIFECPP QLSGAAAAGG GDQLPPCFVH FNWDSAVDQN AGAHFESALS SMVSSPSSTN  60
PAPAGAENLV IRELIGRLGS ICNSGEISPQ SHRYGGGAAT SCYSTPLNSP PKLNLSNMAD  120
HLPRLGNSAP PPPPPLTTHL MAFAADPEFA ERAARLSCFG GRCYGGQTGL SRVSSSQSLM  180
AAPPDGSQLE VDMRSRLSST RLSRSSTPDD AEFGGAREEE QPPPAPAAQQ SSRARNDGSA  240
GRKRKTAPKG KAKAAAAEDS NAKRSKSEES AGAGEDDVQP QQPKAEPNSD SGDDKGSNSK  300
PPAEPPKQDY IHVRARRGQA TDSHSLAERV RREKISQRMK FLQDLVPGCN KVTGKALMLD  360
EIINYVQSLQ RQVEFLSMKL ATVNPRLDFN VESLLPKGIN QSRGSLPHSV FPPPETASPA  420
FPFAQQETPL QSIVTGGGME SHSPMNHHTH HHHHHHHPLA GFMDASSQLV TFWEDDLHSV  480
VQMGAVQNQE AALSSLSFPS TAATHMTVQL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907240.11e-146PREDICTED: transcription factor bHLH62
TrEMBLA0A061ERY91e-142A0A061ERY9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGVIT_05s0029g00390.t011e-137(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.16e-59bHLH family protein